The Evolutionary Pre-Processor (version 3.0) Batch Run Report |
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Batch Details
Batch run name | yeast_1 |
Description | Yeast 1 on Kaiser |
This report file | yeast_1/yeast_1_report.html |
data file | /home/cssip/jsherrah/EPrep3/data/yeast_1.dat |
Time of completion | Mon Jun 22 23:02:07 1998 |
Duration of Batch | 7 hours, 19 minutes, 27 seconds |
Random Seed | 176849066 (from user) |
Average generations per run | 146.10 |
Average failed feature creations per run | 5124.80 |
Average fitness evalutions per run | 87806.10 |
Test Set Improvement | 22.10 % |
Data Partition
Class | Training | Validation | Test | Total |
0 | 233 | 115 | 115 | 463 |
1 | 214 | 110 | 105 | 429 |
2 | 122 | 62 | 60 | 244 |
3 | 81 | 40 | 42 | 163 |
4 | 25 | 12 | 14 | 51 |
5 | 22 | 12 | 10 | 44 |
6 | 17 | 8 | 10 | 35 |
7 | 15 | 7 | 8 | 30 |
8 | 11 | 4 | 5 | 20 |
9 | 2 | 1 | 2 | 5 |
Total | 742 | 371 | 371 | 1484 |
Summary of Results
Original Classification Errors (%)
Classifier | Training | Validation | Test |
Maximum Likelihood(ML) | 68.60 | 69.00 | 69.00 |
Parallelepiped(PPD) | 72.64 | 81.40 | 83.83 |
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1 | 46.63 | 49.87 | 56.60 | 0.020 | 7 | 7 | 53 | PPD |
2 | 46.36 | 52.02 | 52.56 | 0.152 | 8 | 8 | 58 | PPD |
3 | 45.01 | 49.87 | 52.56 | 0.195 | 8 | 8 | 170 | PPD |
4 | 50.67 | 52.83 | 66.04 | 0.000 | 6 | 8 | 32 | PPD |
5 | 47.57 | 49.33 | 55.80 | 0.014 | 6 | 8 | 53 | PPD |
6 | 41.78 | 47.71 | 53.64 | 0.298 | 7 | 8 | 147 | PPD |
7 | 44.07 | 49.33 | 76.82 | 0.000 | 6 | 7 | 56 | PPD |
8 | 39.62 | 46.90 | 46.90 | 0.776 | 8 | 8 | 182 | PPD |
9 | 49.19 | 52.29 | 59.30 | 0.000 | 6 | 8 | 98 | PPD |
10 | 43.80 | 48.25 | 57.95 | 0.002 | 7 | 8 | 51 | PPD |
Ave. | 45.47 (3.17 ) | 49.84 (1.90 ) | 57.82 (7.93 ) | 0.15 (0.23 ) | 6.90 (0.83 ) | 7.80 (0.40 ) | 90.00 (52.90 ) | PPD |
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Total | ||||||||||
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Ground Truth |
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46 | 42 | 11 | 4 | 3 | 0 | 8 | 0 | 1 | 0 | 115 |
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20 | 67 | 2 | 13 | 2 | 0 | 0 | 0 | 1 | 0 | 105 | |
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10 | 10 | 31 | 5 | 1 | 0 | 1 | 1 | 1 | 0 | 60 | |
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1 | 5 | 0 | 32 | 3 | 0 | 0 | 1 | 0 | 0 | 42 | |
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0 | 2 | 1 | 1 | 6 | 2 | 2 | 0 | 0 | 0 | 14 | |
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0 | 0 | 0 | 0 | 3 | 5 | 2 | 0 | 0 | 0 | 10 | |
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0 | 0 | 0 | 0 | 0 | 0 | 10 | 0 | 0 | 0 | 10 | |
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3 | 4 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 8 | |
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1 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | |
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1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | |
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82 | 132 | 46 | 56 | 19 | 7 | 24 | 2 | 3 | 0 | 371 |
Average Operator Probabilities
Operator | Average Probability |
Delete-Feature Mutation | 0.064 |
Add-Feature Mutation | 0.109 |
Hoist Mutation | 0.077 |
Truncate Mutation | 0.087 |
Swap Mutation | 0.128 |
One-Symbol Mutation | 0.090 |
All-Nodes Mutation | 0.081 |
One-Node Mutation | 0.111 |
Grow Mutation | 0.083 |
High-Level Crossover | 0.170 |
Number of Run Terminations attributed to each Criterion
Termination Criterion | Number of Terminations |
TP Criterion | 0 |
GL Criterion | 1 |
Max. Generations | 9 |
Client Abort | 0 |
Zero Validation Error | 0 |
Total | 10 |
Related Data Files
Description | Filename |
yeast_1_gen.m | Matlab plot generation function |
yeast_1_bogf_ave.{eps,gif} | Best-of-generation Fitness, averaged over 10 runs |
yeast_1_bogv_ave.{eps,gif} | Best-of-generation Validation Set Error, averaged over 10 runs |
yeast_1_avef_ave.{eps,gif} | Average fitness, averaged over 10 runs |
yeast_1_stdf_ave.{eps,gif} | Standard deviation of fitness, averaged over 10 runs |
yeast_1_nftr_ave.{eps,gif} | Average number of features per individual, averaged over 10 runs |
yeast_1_nnode_ave.{eps,gif} | Average number of nodes per individual, averaged over 10 runs |
yeast_1_nint_ave.{eps,gif} | Average number of introns per individual, averaged over 10 runs |
yeast_1_ntrl_ave.{eps,gif} | Average number of RAT trials per individual, averaged over 10 runs |
yeast_1_opprob_ave.{eps,gif} | Average probability of each genetic operator, averaged over 10 runs |
yeast_1_run_x.dat | Binary data file containing results of run x (read by Matlab functions) |
yeast_1_bor_x.prep x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Best-of-run individual for run x |
yeast_1_run_x.corr x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Feature correlation file for run x |
yeast_1_tst_bor_x.pred x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Test set predictions for best-of-run individual from run x |
yeast_1_bogf_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Best-of-generation Fitness for run x |
yeast_1_bogv_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Best-of-generation Validation Set Error for run x |
yeast_1_avef_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average fitness for run x |
yeast_1_stdf_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Standard deviation of fitness for run x |
yeast_1_nftr_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of features per individual for run x |
yeast_1_nnode_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of nodes per individual for run x |
yeast_1_nint_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of introns per individual for run x |
yeast_1_ntrl_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of RAT trials per individual for run x |
yeast_1_opprob_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average probability of each genetic operator for run x |