The Evolutionary Pre-Processor (version 3.0)
Batch Run Report

 

Batch Details
Batch run name yeast_3
Description Yeast 3 on Hilbert
This report file postfinal/yeast_3/yeast_3_report.html
data file /home/cssip/jsherrah/EPrep3/data/yeast_3.dat
Time of completion Sat Jun 20 17:45:53 1998
Duration of Batch 6 hours, 22 minutes, 55 seconds
Random Seed 41976456 (from clock)
Average generations per run 151.00
Average failed feature creations per run 4602.10
Average fitness evalutions per run 90751.00
Test Set Improvement 15.90 %
 
 

Data Partition
 
Class Training Validation Test Total
0 233 113 117 463
1 214 110 105 429
2 123 63 58 244
3 81 41 41 163
4 25 12 14 51
5 22 11 11 44
6 17 8 10 35
7 15 7 8 30
8 10 5 5 20
9 2 1 2 5
Total 742 371 371 1484

Summary of Results

  Original Classification Errors (%)
Classifier Training Validation Test
Maximum Likelihood(ML) 68.60 69.54 68.46

  EPrep Best-of-run Classification Errors (%)
Run
Training
Validation
Test
McNemar confidence
# Features
# Inputs
# Nodes
Classifier
1 44.34 47.98 51.21 0.401 2 8 112 ML
2 48.25 45.01 52.56 0.476 2 7 43 ML
3 48.25 50.13 51.48 0.121 2 8 55 ML
4 48.79 48.52 53.91 0.055 2 7 39 ML
5 51.35 49.06 51.48 0.239 2 8 72 ML
6 47.04 45.28 53.10 0.092 2 7 110 ML
7 51.75 54.72 54.99 0.046 2 7 33 ML
8 47.04 48.52 52.29 0.140 2 6 53 ML
9 53.23 49.60 54.18 0.284 2 7 75 ML
10 50.13 47.17 54.99 0.206 2 8 62 ML
Ave. 49.02 (2.51 ) 48.60 (2.59 ) 53.02 (1.36 ) 0.21 (0.14 ) 2.00 (0.00 ) 7.30 (0.64 ) 65.40 (26.11 ) ML

  Confusion matrix for Best Ever Individual from run 2
Class
Predicted
Total
1
2
3
4
5
6
7
8
9
10
Ground Truth
1
43 55 7 7 0 0 1 4 0 0 117
2
24 68 6 5 1 1 0 0 0 0 105
3
22 12 16 2 1 2 2 0 1 0 58
4
8 0 0 30 1 0 0 1 1 0 41
5
2 0 0 1 3 5 3 0 0 0 14
6
0 0 0 0 1 7 3 0 0 0 11
7
2 1 0 0 0 2 5 0 0 0 10
8
3 2 0 1 0 0 2 0 0 0 8
9
0 0 0 0 0 0 0 1 4 0 5
10
0 0 0 0 0 1 0 1 0 0 2
Total
104 138 29 46 7 18 16 7 6 0 371

Average Operator Probabilities
Operator Average Probability
Delete-Feature Mutation 0.073
Add-Feature Mutation 0.087
Hoist Mutation 0.092
Truncate Mutation 0.095
Swap Mutation 0.145
One-Symbol Mutation 0.090
All-Nodes Mutation 0.079
One-Node Mutation 0.080
Grow Mutation 0.100
High-Level Crossover 0.159
 

Number of Run Terminations attributed to each Criterion
Termination Criterion Number of Terminations
TP Criterion 0
GL Criterion 0
Max. Generations 10
Client Abort 0
Zero Validation Error 0
Total 10
 
 

Related Data Files
Description Filename
yeast_3_gen.m Matlab plot generation function
yeast_3_bogf_ave.{eps,gif} Best-of-generation Fitness, averaged over 10 runs
yeast_3_bogv_ave.{eps,gif} Best-of-generation Validation Set Error, averaged over 10 runs
yeast_3_avef_ave.{eps,gif} Average fitness, averaged over 10 runs
yeast_3_stdf_ave.{eps,gif} Standard deviation of fitness, averaged over 10 runs
yeast_3_nftr_ave.{eps,gif} Average number of features per individual, averaged over 10 runs
yeast_3_nnode_ave.{eps,gif} Average number of nodes per individual, averaged over 10 runs
yeast_3_nint_ave.{eps,gif} Average number of introns per individual, averaged over 10 runs
yeast_3_ntrl_ave.{eps,gif} Average number of RAT trials per individual, averaged over 10 runs
yeast_3_opprob_ave.{eps,gif} Average probability of each genetic operator, averaged over 10 runs
yeast_3_run_x.dat Binary data file containing results of run x (read by Matlab functions)
yeast_3_bor_x.prep 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Best-of-run individual for run x
yeast_3_run_x.corr 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Feature correlation file for run x
yeast_3_tst_bor_x.pred 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Test set predictions for best-of-run individual from run x
yeast_3_bogf_x.{eps,gif} 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Best-of-generation Fitness for run x
yeast_3_bogv_x.{eps,gif} 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Best-of-generation Validation Set Error for run x
yeast_3_avef_x.{eps,gif} 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Average fitness for run x
yeast_3_stdf_x.{eps,gif} 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Standard deviation of fitness for run x
yeast_3_nftr_x.{eps,gif} 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Average number of features per individual for run x
yeast_3_nnode_x.{eps,gif} 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Average number of nodes per individual for run x
yeast_3_nint_x.{eps,gif} 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Average number of introns per individual for run x
yeast_3_ntrl_x.{eps,gif} 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Average number of RAT trials per individual for run x
yeast_3_opprob_x.{eps,gif} 
x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
Average probability of each genetic operator for run x