The Evolutionary Pre-Processor (version 3.0) Batch Run Report |
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Batch Details
Batch run name | yeast_3 |
Description | Yeast 3 on Hilbert |
This report file | postfinal/yeast_3/yeast_3_report.html |
data file | /home/cssip/jsherrah/EPrep3/data/yeast_3.dat |
Time of completion | Sat Jun 20 17:45:53 1998 |
Duration of Batch | 6 hours, 22 minutes, 55 seconds |
Random Seed | 41976456 (from clock) |
Average generations per run | 151.00 |
Average failed feature creations per run | 4602.10 |
Average fitness evalutions per run | 90751.00 |
Test Set Improvement | 15.90 % |
Data Partition
Class | Training | Validation | Test | Total |
0 | 233 | 113 | 117 | 463 |
1 | 214 | 110 | 105 | 429 |
2 | 123 | 63 | 58 | 244 |
3 | 81 | 41 | 41 | 163 |
4 | 25 | 12 | 14 | 51 |
5 | 22 | 11 | 11 | 44 |
6 | 17 | 8 | 10 | 35 |
7 | 15 | 7 | 8 | 30 |
8 | 10 | 5 | 5 | 20 |
9 | 2 | 1 | 2 | 5 |
Total | 742 | 371 | 371 | 1484 |
Summary of Results
Original Classification Errors (%)
Classifier | Training | Validation | Test |
Maximum Likelihood(ML) | 68.60 | 69.54 | 68.46 |
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1 | 44.34 | 47.98 | 51.21 | 0.401 | 2 | 8 | 112 | ML |
2 | 48.25 | 45.01 | 52.56 | 0.476 | 2 | 7 | 43 | ML |
3 | 48.25 | 50.13 | 51.48 | 0.121 | 2 | 8 | 55 | ML |
4 | 48.79 | 48.52 | 53.91 | 0.055 | 2 | 7 | 39 | ML |
5 | 51.35 | 49.06 | 51.48 | 0.239 | 2 | 8 | 72 | ML |
6 | 47.04 | 45.28 | 53.10 | 0.092 | 2 | 7 | 110 | ML |
7 | 51.75 | 54.72 | 54.99 | 0.046 | 2 | 7 | 33 | ML |
8 | 47.04 | 48.52 | 52.29 | 0.140 | 2 | 6 | 53 | ML |
9 | 53.23 | 49.60 | 54.18 | 0.284 | 2 | 7 | 75 | ML |
10 | 50.13 | 47.17 | 54.99 | 0.206 | 2 | 8 | 62 | ML |
Ave. | 49.02 (2.51 ) | 48.60 (2.59 ) | 53.02 (1.36 ) | 0.21 (0.14 ) | 2.00 (0.00 ) | 7.30 (0.64 ) | 65.40 (26.11 ) | ML |
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Total | ||||||||||
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Ground Truth |
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43 | 55 | 7 | 7 | 0 | 0 | 1 | 4 | 0 | 0 | 117 |
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24 | 68 | 6 | 5 | 1 | 1 | 0 | 0 | 0 | 0 | 105 | |
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22 | 12 | 16 | 2 | 1 | 2 | 2 | 0 | 1 | 0 | 58 | |
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8 | 0 | 0 | 30 | 1 | 0 | 0 | 1 | 1 | 0 | 41 | |
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2 | 0 | 0 | 1 | 3 | 5 | 3 | 0 | 0 | 0 | 14 | |
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0 | 0 | 0 | 0 | 1 | 7 | 3 | 0 | 0 | 0 | 11 | |
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2 | 1 | 0 | 0 | 0 | 2 | 5 | 0 | 0 | 0 | 10 | |
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3 | 2 | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 8 | |
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0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 0 | 5 | |
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0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 2 | |
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104 | 138 | 29 | 46 | 7 | 18 | 16 | 7 | 6 | 0 | 371 |
Average Operator Probabilities
Operator | Average Probability |
Delete-Feature Mutation | 0.073 |
Add-Feature Mutation | 0.087 |
Hoist Mutation | 0.092 |
Truncate Mutation | 0.095 |
Swap Mutation | 0.145 |
One-Symbol Mutation | 0.090 |
All-Nodes Mutation | 0.079 |
One-Node Mutation | 0.080 |
Grow Mutation | 0.100 |
High-Level Crossover | 0.159 |
Number of Run Terminations attributed to each Criterion
Termination Criterion | Number of Terminations |
TP Criterion | 0 |
GL Criterion | 0 |
Max. Generations | 10 |
Client Abort | 0 |
Zero Validation Error | 0 |
Total | 10 |
Related Data Files
Description | Filename |
yeast_3_gen.m | Matlab plot generation function |
yeast_3_bogf_ave.{eps,gif} | Best-of-generation Fitness, averaged over 10 runs |
yeast_3_bogv_ave.{eps,gif} | Best-of-generation Validation Set Error, averaged over 10 runs |
yeast_3_avef_ave.{eps,gif} | Average fitness, averaged over 10 runs |
yeast_3_stdf_ave.{eps,gif} | Standard deviation of fitness, averaged over 10 runs |
yeast_3_nftr_ave.{eps,gif} | Average number of features per individual, averaged over 10 runs |
yeast_3_nnode_ave.{eps,gif} | Average number of nodes per individual, averaged over 10 runs |
yeast_3_nint_ave.{eps,gif} | Average number of introns per individual, averaged over 10 runs |
yeast_3_ntrl_ave.{eps,gif} | Average number of RAT trials per individual, averaged over 10 runs |
yeast_3_opprob_ave.{eps,gif} | Average probability of each genetic operator, averaged over 10 runs |
yeast_3_run_x.dat | Binary data file containing results of run x (read by Matlab functions) |
yeast_3_bor_x.prep x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Best-of-run individual for run x |
yeast_3_run_x.corr x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Feature correlation file for run x |
yeast_3_tst_bor_x.pred x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Test set predictions for best-of-run individual from run x |
yeast_3_bogf_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Best-of-generation Fitness for run x |
yeast_3_bogv_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Best-of-generation Validation Set Error for run x |
yeast_3_avef_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average fitness for run x |
yeast_3_stdf_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Standard deviation of fitness for run x |
yeast_3_nftr_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of features per individual for run x |
yeast_3_nnode_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of nodes per individual for run x |
yeast_3_nint_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of introns per individual for run x |
yeast_3_ntrl_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of RAT trials per individual for run x |
yeast_3_opprob_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average probability of each genetic operator for run x |