The Evolutionary Pre-Processor (version 3.0) Batch Run Report |
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Batch Details
Batch run name | yeast_2 |
Description | Yeast 2 on Hilbert |
This report file | yeast_2/yeast_2_report.html |
data file | /home/cssip/jsherrah/EPrep3/data/yeast_2.dat |
Time of completion | Tue Jun 23 11:46:20 1998 |
Duration of Batch | 14 hours, 1 minutes, 26 seconds |
Random Seed | 18446744071573217802 (from user) |
Average generations per run | 151.00 |
Average failed feature creations per run | 4717.70 |
Average fitness evalutions per run | 90751.00 |
Test Set Improvement | 21.02 % |
Data Partition
Class | Training | Validation | Test | Total |
0 | 232 | 115 | 116 | 463 |
1 | 215 | 107 | 107 | 429 |
2 | 123 | 62 | 59 | 244 |
3 | 81 | 41 | 41 | 163 |
4 | 25 | 12 | 14 | 51 |
5 | 22 | 11 | 11 | 44 |
6 | 17 | 10 | 8 | 35 |
7 | 15 | 7 | 8 | 30 |
8 | 10 | 5 | 5 | 20 |
9 | 2 | 1 | 2 | 5 |
Total | 742 | 371 | 371 | 1484 |
Summary of Results
Original Classification Errors (%)
Classifier | Training | Validation | Test |
Maximum Likelihood(ML) | 68.73 | 69.00 | 68.73 |
Parallelepiped(PPD) | 75.07 | 77.36 | 79.78 |
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1 | 45.69 | 52.29 | 78.17 | 0.000 | 8 | 8 | 224 | PPD |
2 | 46.09 | 49.60 | 56.33 | 0.008 | 8 | 8 | 97 | PPD |
3 | 53.50 | 52.02 | 61.46 | 0.002 | 7 | 8 | 99 | PPD |
4 | 46.63 | 48.52 | 69.27 | 0.000 | 7 | 8 | 63 | PPD |
5 | 44.61 | 46.90 | 47.17 | 0.698 | 6 | 8 | 61 | PPD |
6 | 42.72 | 46.09 | 47.71 | 0.752 | 6 | 8 | 233 | PPD |
7 | 44.74 | 47.71 | 49.87 | 0.603 | 8 | 8 | 75 | PPD |
8 | 42.72 | 46.63 | 51.21 | 0.476 | 8 | 8 | 263 | PPD |
9 | 47.57 | 49.87 | 57.95 | 0.001 | 8 | 8 | 65 | PPD |
10 | 47.84 | 52.29 | 76.28 | 0.000 | 7 | 8 | 103 | PPD |
Ave. | 46.21 (2.95 ) | 49.19 (2.28 ) | 59.54 (10.93 ) | 0.25 (0.32 ) | 7.30 (0.78 ) | 8.00 (0.00 ) | 128.30(75.09 ) | PPD |
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Total | ||||||||||
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Ground Truth |
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61 | 22 | 9 | 21 | 0 | 0 | 3 | 0 | 0 | 0 | 116 |
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32 | 56 | 2 | 12 | 0 | 0 | 5 | 0 | 0 | 0 | 107 | |
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17 | 4 | 31 | 2 | 0 | 2 | 3 | 0 | 0 | 0 | 59 | |
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1 | 2 | 1 | 35 | 0 | 0 | 2 | 0 | 0 | 0 | 41 | |
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1 | 1 | 0 | 3 | 1 | 6 | 2 | 0 | 0 | 0 | 14 | |
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0 | 1 | 0 | 0 | 0 | 5 | 5 | 0 | 0 | 0 | 11 | |
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1 | 1 | 1 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 8 | |
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2 | 2 | 0 | 3 | 0 | 0 | 1 | 0 | 0 | 0 | 8 | |
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1 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 | |
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0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | |
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116 | 91 | 46 | 77 | 1 | 14 | 25 | 0 | 1 | 0 | 371 |
Average Operator Probabilities
Operator | Average Probability |
Delete-Feature Mutation | 0.065 |
Add-Feature Mutation | 0.108 |
Hoist Mutation | 0.077 |
Truncate Mutation | 0.088 |
Swap Mutation | 0.118 |
One-Symbol Mutation | 0.115 |
All-Nodes Mutation | 0.079 |
One-Node Mutation | 0.105 |
Grow Mutation | 0.089 |
High-Level Crossover | 0.156 |
Number of Run Terminations attributed to each Criterion
Termination Criterion | Number of Terminations |
TP Criterion | 0 |
GL Criterion | 0 |
Max. Generations | 10 |
Client Abort | 0 |
Zero Validation Error | 0 |
Total | 10 |
Related Data Files
Description | Filename |
yeast_2_gen.m | Matlab plot generation function |
yeast_2_bogf_ave.{eps,gif} | Best-of-generation Fitness, averaged over 10 runs |
yeast_2_bogv_ave.{eps,gif} | Best-of-generation Validation Set Error, averaged over 10 runs |
yeast_2_avef_ave.{eps,gif} | Average fitness, averaged over 10 runs |
yeast_2_stdf_ave.{eps,gif} | Standard deviation of fitness, averaged over 10 runs |
yeast_2_nftr_ave.{eps,gif} | Average number of features per individual, averaged over 10 runs |
yeast_2_nnode_ave.{eps,gif} | Average number of nodes per individual, averaged over 10 runs |
yeast_2_nint_ave.{eps,gif} | Average number of introns per individual, averaged over 10 runs |
yeast_2_ntrl_ave.{eps,gif} | Average number of RAT trials per individual, averaged over 10 runs |
yeast_2_opprob_ave.{eps,gif} | Average probability of each genetic operator, averaged over 10 runs |
yeast_2_run_x.dat | Binary data file containing results of run x (read by Matlab functions) |
yeast_2_bor_x.prep x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Best-of-run individual for run x |
yeast_2_run_x.corr x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Feature correlation file for run x |
yeast_2_tst_bor_x.pred x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Test set predictions for best-of-run individual from run x |
yeast_2_bogf_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Best-of-generation Fitness for run x |
yeast_2_bogv_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Best-of-generation Validation Set Error for run x |
yeast_2_avef_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average fitness for run x |
yeast_2_stdf_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Standard deviation of fitness for run x |
yeast_2_nftr_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of features per individual for run x |
yeast_2_nnode_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of nodes per individual for run x |
yeast_2_nint_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of introns per individual for run x |
yeast_2_ntrl_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average number of RAT trials per individual for run x |
yeast_2_opprob_x.{eps,gif} x = 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
Average probability of each genetic operator for run x |