Please use this identifier to cite or link to this item:
https://hdl.handle.net/2440/106626
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DC Field | Value | Language |
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dc.contributor.author | Guerin, G. | - |
dc.contributor.author | Lowe, A. | - |
dc.date.issued | 2015 | - |
dc.identifier.citation | SoftwareX, 2015; 3-4:22-26 | - |
dc.identifier.issn | 2352-7110 | - |
dc.identifier.issn | 2352-7110 | - |
dc.identifier.uri | http://hdl.handle.net/2440/106626 | - |
dc.description.abstract | Applications are needed to map biodiversity from large-scale species occurrence datasets whilst seamlessly integrating with existing functions in R. Phylogenetic endemism (PE) is a biodiversity measure based on range-restricted phylogenetic diversity (PD). Current implementations use area of occupancy (AOO) or frequency to estimate the spatial range of branch-length (i.e. phylogenetic range-rarity), rather than extent of occurrence (EOO; i.e. georeferenced phylogenetic endemism), which is known to produce different range estimates.We present R functions to map PD or PE weighted by AOO or EOO (new georeferenced implementation), taking as inputs georeferenced species occurrences and a phylogeny. Non-parametric statistics distinguish PD/PE from trivial correlates of species richness and sampling intensity. | - |
dc.description.statementofresponsibility | Greg R. Guerin, Andrew J. Lowe | - |
dc.language.iso | en | - |
dc.publisher | Elsevier BV | - |
dc.rights | © 2015 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY license (http://creativecommons.org/licenses/ by/4.0/). | - |
dc.source.uri | http://dx.doi.org/10.1016/j.softx.2015.10.002 | - |
dc.subject | Phylogenetic diversity; phylogenetic endemism; area of occupancy; extent of occurrence; minimum convex polygon; R function; non-parametric statistics; interquartile range | - |
dc.title | Mapping phylogenetic endemism in R using georeferenced branch extents | - |
dc.type | Journal article | - |
dc.identifier.doi | 10.1016/j.softx.2015.10.002 | - |
dc.relation.grant | ARC | - |
pubs.publication-status | Published | - |
dc.identifier.orcid | Guerin, G. [0000-0002-2104-6695] | - |
dc.identifier.orcid | Lowe, A. [0000-0003-1139-2516] | - |
Appears in Collections: | Aurora harvest 3 Environment Institute publications |
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File | Description | Size | Format | |
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hdl_106626.pdf | Published version | 526.04 kB | Adobe PDF | View/Open |
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